芽孢杆菌种名是以发表在ijsem微生物系统进化国际学报（International Journal of Systematic and Evolutionary Microbiology）和ijsb细菌系统进化国际学报（International Journal of Systematic
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第二章 芽孢杆菌属种名录2.1芽孢杆菌种名目录来源芽孢杆菌种名是以发表在IJSEM微生物系统进化国际学报（International Journal of Systematic and Evolutionary Microbiology）和IJSB细菌系统进化国际学报（International Journal of Systematic Bacteriology）以及国际权威学报上使用的种名为准。并列入《核准细菌名录》（Approved Lists of Bacterial Names）和《确认细菌名录》（Validation List）认定。在国际上，有专门收集细菌种名目录的著作和网站，包括了《细菌代码规则》(Rules of the Bacteriological Code)、《伯杰氏系统细菌学手册》--《原核生物分类纲要》（Taxonomic Outline of the Prokaryotes Release 5.0, Bergey’s Manual of Systematic Bacteriology）、《名录公告》(Notification List)、《原核生物名称目录》（List of Prokaryotic Names with Standing in Nomenclature）、NCBI数据库等等。各国菌种保存中心也是芽孢杆菌目录的重要来源，如德国菌钟保存中心（DSMZ）等。 不同的文献来源，由于收集统计的时间、范围、内容、分类体系等的差异，所收集的芽孢杆菌种名数量不同。有的分类系统名录将芽孢杆菌分为一个属，如核准种名目录（Approved Lists 2005）收集的芽孢杆菌种名有175个，NCBI数据库(2006)上收集的芽孢杆菌种名有182个，德国菌种保存中心种名目录（DSMZ 2006）收集的芽孢杆菌种名有187个；有的分类系统将芽孢杆菌分为20多个属，如《伯杰氏手册：原核生物分类纲要》（2004）将芽孢杆菌类细菌分为22属，记述了260种。 2.2芽孢杆菌属种名录本名录参考《核准种名目录2005》（Approved Lists 2005）、NCBI数据库(2006)、德国菌种保存中心种名目录（DSMZ 2006）、《伯杰氏手册：原核生物分类纲要》（2004），将芽孢杆菌作为一个属, 进行种名汇总，形成以下目录，共记述了244种。中文学名参照《细菌名称》第二版中列出的进行标注.
Bacillus acidicola 00001 General Description DNA Chromosome Bacillus acidicola Entire molecule length: 1551 bp Standard Fields References Sequence 1 tggagagttt gatcctggct caggacgaac gctggcggcg tgcctaatac atgcaagtcg agcgaatcaa ttgggagctt gctccctkkw rgttagcggc 101 ggacgggtga gtaacacgtg ggyaacctgc ctgtaagact gggataacty cgggaaaccg grgctaatac cggataactw mtwmstgcyg catgggkrvw 201 tatttgaaag rtggctttyr gctatcactt acagatggrc ccgcgsygca ttagctagtt ggtgaggtaa srgctcacca aggcaacgat gcrtagccga 301 cctgagaggg tgatcggcca cactgggact gagacacggc ccagactcct acgggaggca gcagtaggga atcttccgca atggacgaaa gtctgacgga 401 gcaacgccgc gtgagtgatg aaggytttcg grtcgtaaaa ctctgttgtt agggaagaac aagtaycgtt cgaatagggc ggtaccttga cggtacctaa 501 ccagaaagcc acggctaact acgtgccagc agccgcggta atacgtaggt ggcaagcgtt rtccggaatt attgggcgta aagcgcgcgc aggcggtttc 601 ttaagtctga tgtgaaagcc cacggctcaa ccgtggaggg tcattggaaa ctgggagact tgagtgcaga agaggagagt ggaattccac gtgtagcggt 701 gaaatgcgta gakatgtgga ggaacaccag tggcgaaggc gactctctgg tctgtaactg acgctgaggc gcgaaagcgt ggggagcraa caggattaga 801 taccctggta gtccacgccg taaacgatga gtgctaagtg ttagagggtt tccgcccttt agtgctgmag ytaacgcatt aagcactccg cctggggagt 901 acggycgcaa grctgaaact caaaggaatt gacgggggcc cgcacaagcg gtggagcatg tggtttaatt cgaagcaacg cgaagaacct taccaggtct 1001 tgacatcctc tgacaacyct agagatagrg ctttcccctt cgggggacag agtgacaggt ggtgcatggt tgtcgtcagc tcgtgtcgtg agatgttggg 1101 ttaagtcccg caacgagcgc aacccttgac cttagttgcc agcattmagt tgggcactct agggtgactg ccggtgacaa accggaggaa ggtggggatg 1201 acgtcaaatc atcatgcccc ttatgacctg ggctacacac gtgctacaat ggatggtaca aagggcwgca arrccgcgag gtkkagcsaa tcccataaaa 1301 ccattctcag ttcggattgt aggctgcaac tcgcctacat gaagcyggaa tcgctagtaa tcgcggatca gcatgccgcg gtgaatacgt tcccgggcct 1401 tgtacacacc gcccgtcaca ccacgagagt ttgtaacacc cgaagtcggt gaggtaacct tttggagcca gccgcckaag gtgggacaga tgattggggt 1501 gaagtcgtaa caaggtagcc gtatcggaag gtgcggntgg atcacctcct t Bacillus acidicola AF547209 General Description DNA Bacillus acidicola AF547209 Entire molecule length: 1548 bp Standard Fields Original Source Database: GenBank Modification Date in the Original DB: 20-DEC-2005 Original Accession Number(s): AF547209 Version in the Original DB: AF547209.1 GI:24940651 Sequence Source: Bacillus acidicola Organizm(s): Bacillus acidicola(Bacillus acidicola) Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus References REFERENCE 1 (bases 1 to 1548) AUTHORS Albert,R.A., Archambault,J., Rossello-Mora,R., Tindall,B.J. and Matheny,M. TITLE Bacillus acidicola sp. nov., a novel mesophilic, acidophilic species isolated from acidic Sphagnum peat bogs in Wisconsin JOURNAL Int. J. Syst. Evol. Microbiol. 55 (PT 5), 2125-2130 (2005) REFERENCE 2 (bases 1 to 1548) AUTHORS Albert,R.A., Archambault,J., Matheny,M. and Waddington,M.G. TITLE Direct Submission JOURNAL Submitted (16-SEP-2002) Semco Bioscience Inc., 630 East Keefe, Milwaukee, WI 53212, USA Sequence 1 tggagagttt gatcctggct caggacgaac gctggcggcg tgcctaatac atgcaagtcg agcgaatcaa ttgggagctt gctccctttt ggttagcggc 101 ggacgggtga gtaacacgtg ggtaacctgc ctgtaagact gggataactc cgggaaaccg gggctaatac cggataactt cttcctccgc atgggggrat 201 attgaaagat ggcttcggct atcacttaca gatggacccg cggcgcatta gctagttggt gaggtaacgg ctcaccaagg caacgatgcg tagccgacct 301 gagagggtga tcggccacac tgggactgag acacggccca gactcctacg ggaggcagca gtagggaatc ttccgcaatg gacgaaagtc tgacggagca 401 acgccgcgtg agtgatgaag gttttcggat cgtaaaactc tgttgttagg gaagaacaag taccgttcga atagggcggt accttgacgg tacctaacca 501 gaaagccacg gctaactacg tgccagcagc cgcggtaata cgtaggtggc aagcgttgtc cggaattatt gggcgtaaag cgcgcgcagg cggtttctta 601 agtctgatgt gaaagcccac ggctcaaccg tggagggtca ttggaaactg ggagacttga gtgcagaaga ggagagtgga attccacgtg tagcggtgaa 701 atgcgtagat atgtggagga acaccagtgg cgaaggcgac tctctggtct gtaactgacg ctgaggcgcg aaagcgtggg gagcgaacag gattagatac 801 cctggtagtc cacgccgtaa acgatgagtg ctaagtgtta gagggtttcc gccctttagt gctgcagcta acgcattaag cactccgcct ggggagtacg 901 gccgcaaggc tgaaactcaa aggaattgac gggggcccgc acaagcggtg gagcatgtgg tttaattcga agcaacgcga agaaccttac caggtcttga 1001 catcctctga caaccctaga gatagggctt tccccttcgg gggacagagt gacaggtggt gcatggttgt cgtcagctcg tgtcgtgaga tgttgggtta 1101 agtcccgcaa cgagcgcaac ccttgacctt agttgccagc attcagttgg gcactctagg gtgactgccg gtgacaaacc ggaggaaggt ggggatgacg 1201 tcaaatcatc atgcccctta tgacctgggc tacacacgtg ctacaatgga tggtacaaag ggctgcaaga ccgcgaggtt tagccaatcc cataaaacca 1301 ttctcagttc ggattgtagg ctgcaactcg cctacatgaa gccggaatcg ctagtaatcg cggatcagca tgccgcggtg aatacgttcc cgggccttgt 1401 acacaccgcc cgtcacacca cgagagtttg taacacccga agtcggtgag gtaacctttt ggagccagcc gccgaaggtg ggacagatga ttggggtgaa 1501 gtcgtaacaa ggtagccgta tcggaaggtg cggytggatc acctcctt
Bacillus acidocaldarius BARRN5S General Description DNA Bacillus acidocaldarius BARRN5S Entire molecule length: 117 bp Standard Fields Keywords: 5S ribosomal RNA; ribosomal RNA Original Source Database: GenBank Modification Date in the Original DB: 06-JUN-2003 Original Accession Number(s): X01589 Version in the Original DB: X01589.1 GI:39331 Sequence Source: Bacillus amyloliquefaciens Organizm(s): Bacillus amyloliquefaciens(Bacillus amyloliquefaciens) Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus References REFERENCE 1 (bases 1 to 117) AUTHORS Dams,E., Londei,P., Cammarano,P., Vandenberghe,A. and De Wachter,R. TITLE Sequences of the 5S rRNAs of the thermo-acidophilic archaebacterium Sulfolobus solfataricus (Caldariella acidophila) and the thermophilic eubacteria Bacillus acidocaldarius and Thermus aquaticus JOURNAL Nucleic Acids Res. 11 (14), 4667-4676 (1983) Sequence 1 tctggtgact atagcggagg ggcaacaccc gtacccatcc cgaacacgga cgtgaagacc tccagcgccg agaatactgg gagggcagcc tcctgggaaa 101 gtaggtcgtt gccaggc
Bacillus acidovorans BA16SR General Description DNA Bacillus acidovorans BA16SR Entire molecule length: 1437 bp Standard Fields Keywords: 16S ribosomal RNA Original Source Database: GenBank Modification Date in the Original DB: 24-FEB-1994 Original Accession Number(s): X77789 Version in the Original DB: X77789.1 GI:456615 Sequence Source: Bacillus acidovorans Organizm(s): Bacillus acidovorans(Bacillus acidovorans) Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus References REFERENCE 1 AUTHORS Lafay,B., Pichinoty,F. and Christen,R. TITLE Phylogenetic analysis of some Bacillus specific based on comparison of small sub-unit ribosomal RNA sequences JOURNAL Unpublished REFERENCE 2 (bases 1 to 1437) AUTHORS Lafay,B. TITLE Direct Submission JOURNAL Submitted (22-FEB-1994) B. Lafay, CNRS & Univ. Pierre et Marie Curie, Observatoire Oceanologique, Station Zoologique, 06230 Villefranche-sur-mer, FRANCE Sequence 1 acgaacgctg gcggcgtgcc taatacatgc aagtcgagcg gaccaatgaa gagcttgctc ttcggcggtt agcggcggac gggtgagtaa cacgtaggca 101 acctgcctgt acgactggga taactccggg aaaccggagc taataccgga tacttctttc agaccgcatg gtctgaaagg gaaaaccttt ggtcacgtac 201 agatgcgcgt gcggcgcatt agctagttgg tggggtaacg gcctaccaag gcgacgatgc gtagccgacc tgagagggtg atcggccaca ctgggactga 301 gacacggccc agactcctac gggaggcagc agtagggaat cttccgcaat ggacgaaagt ctgacggagc aacgccgcgt gaacgatgaa ggttttcgga 401 tcgtaaagtt ctgttgttag ggaagaaccg cgggatactc ccggtctgac ggtacctaac gagaaagccc cggctaacta cgtgccagca gccgcggtaa 501 tacgtagggg gcaagcgttg tccggaatta ttgggcgtaa agcgcgcgca ggcggcttct taagtcaggt gtgaaagccc acggctcaac cgtggagggc 601 cacttgaaac tgggaagctt gagtgcagga gaggagagcg gaattccacg tgtagcggtg aaatgcgtag agatgtggag gaacacccgt ggcgaaggcg 701 gctctctggc ctgtaactga cgctgaggcg cgaaagcgtg gggagcgaac aggattagat accctggtag tccacgccgt aaacgttgag tgctaggtgt 801 tggggactcc aatcctcagt gccgcacgta acgcaataag cactccgcct ggggagtacg gcgcaaggct gaaactcaaa ggaattgacg gggaccgcac 901 aagcggtgga gcatgtggtt taattcgaag caacgcgaag aaccttacca gggcttgaca tcccgctgac cctcctagag ataggagctc tcttcggagc 1001 agcggtgaca ggtggtgcat ggttgtcgtc agctcgtgtc gtgagatgtt gggttaagtc ccgcaacgag cgcaaccctt gtccttagtt gccagcattt 1101 agttgggcac tctagggaga ctgccgtcga caagacggag gaaggtgggg atgacgtcaa atcatcatgc cccttatgtc ctgggctaca cacgtgctac 1201 aatggatgga acaacgggca gccaactcgc gagagtgcgc gaatccctta aaaccattct cagttcggat tgcaggctgc aactcgcctg catgaagccg 1301 gaatcgctag taatcgcgga tcagcatgcc gcggtgaata cgttcccggg tcttgtacac accgcccgtc acaccacgag agtttgcaac acccgaagtc 1401 ggtgaggtaa ccgcaaggag ccagccgccg aaggtgg
Bacillus aestuarii AB062696 General Description DNA Bacillus aestuarii AB062696 Entire molecule length: 1499 bp Standard Fields Original Source Database: GenBank Modification Date in the Original DB: 03-JUL-2001 Original Accession Number(s): AB062696 Version in the Original DB: AB062696.1 GI:14588592 Sequence Source: Bacillus aestuarii Organizm(s): Bacillus aestuarii(Bacillus aestuarii) Taxonomy: Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus References REFERENCE 1 AUTHORS Ando,Y., Mitsugi,N., Yano,K. and Karube,I. TITLE Bacillus aestuarii sp., isolated from a subtropical and tidal environment in Japan JOURNAL Unpublished REFERENCE 2 (bases 1 to 1499) AUTHORS Ando,Y. and Karube,I. TITLE Direct Submission JOURNAL Submitted (04-JUN-2001) Yoshihiro Ando, Research center for advanced science and technology, University of Tokyo; Komaba 4-6-1, Meguro-ku, Tokyo 153-8904, Japan (E-mail:ando@bio.rcast.u-tokyo.ac.jp, Tel:81-3-5452-5222, Fax:81-3-5452-5227) Sequence 1 gatcctggct caggacgaac gctggcggcg tgcctaatac atgcaagtcg agcggaccaa tagaagcttg cttctgttgg ttagcggcgg acgggtgagt 101 aacacgtggg caacctgcct gtaagactgg gataacttcg ggaaaccgga gctaataccg gataattcat cccctcgcat gaggggntgc tgaaagtcgg 201 ttcacgctga cacttacaga tgggcccgcg gcgcattagc tagttggtga ggtaatggct caccaaggcg acgatgcgta gccgacctga gagggtgatc 301 ggccacactg ggactgagac acggcccaga ctcctacggg aggcagcagt agggaatctt ccacaatgga cgaaagtctg atggagcaac gccgcgtgag 401 cgatgaaggc cttcgggtcg taaagctctg ttgttaggga agaacaagta ccggagtaac tgccggtacc ttgacggtac ctaaccagaa agccacggct 501 aactacgtgc cagcagccgc ggtaatacgt aggtggcaag cgttgtccgg aattattggg cgtaaagcgc gcgcaggcgg tcctttaagt ctgatgtgaa 601 agcccacggc tcaaccgtgg agggtcattg gaaactgggg gacttgagtg cagaagagga aagcggaatt ccacgtgtag cggtgaaatg cgtagagatg 701 tggaggaaca ccagtggcga aggcggcttt ctggtctgta actgacgctg aggcgcgaaa gcgtggggag caaacaggat tagataccct ggtagtccac 801 gccgtaaacg atgagtgcta agtgttagag ggtttccgcc ctttagtgct gcagctaacg cattaagcac tccgcctggg gagtacggcc gcaaggctga 901 aactcacagg aattgacggg ggcccgcaca agcggtggag catgtggttt aattcgaagc aacgcgaaga accttaccag gtcttgacat ccttacgacc 1001 tccctagaga tagggatttc cccttcgggg gacggaagtg acaggtggtg catggttgtc gtcagctcgt gtcgtgagat gttgggttaa gtcccgcaac 1101 gagcgcaacc cttgatctta gttgccagca ttcagttggg cactctaagg tgactgccgg tgacaaaccg gaggaaggtg gggatgacgt caaatcatca 1201 tgccccttat gacctgggct acacacgtgc tacaatggat ggtacaaagg gcagcgaaac cgcgaggtcg agccaatccc ataaaaccat tctcagttcg 1301 gattgcaggc tgcaactcgc ctgcatgaag ccggaatcgc tagtaatcgc ggatcagcat gccgcggtga atacgttccc gggccttgta cacaccgccc 1401 gtcacaccac gagagtttgt aacacccgaa gtcggtgggg taacctttat ggagccagcc gcctaaggtg ggacagatga ttggggtgaa gtcgtaaca
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